Publications

2025

Tasks and Visual Abstractions for 3D Chromatin Representation

Adam Rychlý, Jan Byška, Bára Kozlíková, Katka Furmanová

Computer Graphics Forum

10.1111/cgf.70142

Who Let the Guards Out: Visual Support for Patrolling Games

Matěj Lang, Adam Štěpánek, Róbert Zvara, Vojtěch Řehák, Bára Kozlíková

IEEE Transactions on Visualization and Computer Graphics

10.1109/tvcg.2024.3456306

Helveg: Diagrams for Software Documentation

Adam Štěpánek, David Kuťák, Bára Kozlíková, Jan Byška

IEEE Transactions on Visualization and Computer Graphics

10.1109/tvcg.2025.3589748 Preprint Supplementary material

Visual Support for the Loop Grafting Workflow on Proteins

Filip Opálený, Palko Ulbrich, Joan Planas-Iglesias, Jan Byška, Jan Štourač, David Bednář, Katka Furmanová, Bára Kozlíková, Joan Planas Iglesias

IEEE Transactions on Visualization and Computer Graphics

10.1109/tvcg.2024.3456401

The Language of Infographics: Toward Understanding Conceptual Metaphor Use in Scientific Storytelling

Hana Pokojná, Tobias Isenberg, Stefan Bruckner, Bára Kozlíková, Laura Garrison

IEEE Transactions on Visualization and Computer Graphics

10.1109/tvcg.2024.3456327

Immersive and Interactive Learning With eDIVE: A Solution for Creating Collaborative VR Education Experiences

Vojtěch Brůža, Alžběta Šašinková, Čeněk Šašinka, Zdeněk Stachoň, Bára Kozlíková, Jirka Chmelík

Computer Graphics Forum

10.1111/cgf.70001

Co-authored publications (2025)

A Playful Participatory Planning System (P-PPS): A Framework for Collecting and Analyzing Player-Generated Spatial Data from Minecraft Worlds

Ítalo Sousa de Sena, Lasith Niroshan, Jonáš Rosecký, Vojtěch Brůža, Micheál Butler, Chiara Cocco

2024

Stories with Style: Narrative, Virtual, and Imaginary Spaces of Reading Fiction in Virtual Reality

Nika Kunzová, Adam Štěpánek, Daniel Ricardo Echeverri Giraldo, Danielle Kathryn Langlois, Simone Kriglstein

MUM '24: Proceedings of the International Conference on Mobile and Ubiquitous Multimedia

10.1145/3701571.3701601

Interactive Diagrams for Software Documentation

Adam Štěpánek, David Kuťák, Bára Kozlíková, Jan Byška

IEEE Working Conference on Software Visualization (VISSOFT)

10.1109/VISSOFT64034.2024.00012 Preprint Supplementary material

Design and evaluation of alphabetic and numeric input methods for virtual reality

David Kuťák, Danielle Langlois, Roman Rozič, Jan Byška, Haichao Miao, Simone Kriglstein, Bára Kozlíková

Computers & Graphics

10.1016/j.cag.2024.103955

ProjectAnatomy : a handy tool for learning forearm anatomy with augmented physicalisations

Hana Pokojná, Bára Kozlíková, Katka Furmanová, Simone Kriglstein

Behaviour & Information Technology

10.1080/0144929x.2024.2413161

Cartography of Touch: Transformation of Touch through Anatomical Projections

Hana Pokojná

Leonardo

10.1162/leon_a_02403

Antarstick: Extracting Snow Height From Time‐Lapse Photography

Matěj Lang, Radoslav Mráz, Marek Trtík, Sergej Stoppel, Jan Byška, Bára Kozlíková

Computer Graphics Forum

10.1111/cgf.15088

Make Some Energy: Tangible and Interactive Chemical Reactions

Hana Pokojná, Bára Kozlíková, Simone Kriglstein, Daniel Echeverri

Proceedings of the Expanded 2024 Conference on Animation and Interactive Art

10.5281/zenodo.13382838

Co-authored publications (2024)

InVADo: Interactive Visual Analysis of Molecular Docking Data

Marco Schäfer, Nicolas Brich, Jan Byška, Sérgio M. Marques, David Bednář, Philipp Thiel, Bára Kozlíková, Michael Krone

Who benefits and who doesn't in virtual reality learning: An experimental study comparing two types of school

Radovan Šikl, Karla Brücknerová, Hana Švedová, Filip Děchtěrenko, Pavel Ugwitz, Jirka Chmelík, Hana Pokorná, Vojtěch Juřík

VRET ENVIRONMENTS ARCHITECTURE: ADJUSTING IMMERSIVE VIRTUAL ENVIRONMENTS FOR PSYCHOTHERAPEUTIC TRAINING

Vojtěch Juřík, Kristína Varšová, Jirka Chmelík, Oto Janoušek

2023

Molecumentary: Adaptable Narrated Documentaries Using Molecular Visualization

David Kouřil, Ondrej Strnad, Peter Mindek, Sarkis Halladjian, Tobias Isenberg, M. Eduard Groller, Ivan Viola

IEEE Transactions on Visualization and Computer Graphics

10.1109/tvcg.2021.3130670

State of the Art of Molecular Visualization in Immersive Virtual Environments

David Kuťák, Pere‐Pau Vázquez, Tobias Isenberg, Michael Krone, Marc Baaden, Jan Byška, Bára Kozlíková, Haichao Miao

Computer Graphics Forum

10.1111/cgf.14738

Seeing the unseen: Comparison study of representation approaches for biochemical processes in education

Hana Pokojná, Anastassia Zabrodskaja, Bára Kozlíková, Drew Berry, Simone Kriglstein, Katka Furmanová

PLOS ONE

10.1371/journal.pone.0293592

xOpat: eXplainable Open Pathology Analysis Tool

Jirka Horák, Katka Furmanová, Bára Kozlíková, T. Brázdil, P. Holub, M. Kačenga, M. Gallo, R. Nenutil, Jan Byška, Vít Rusňák, Tomáš Brázdil, Matej Gallo

Computer Graphics Forum

10.1111/cgf.14812

sMolBoxes: Dataflow Model for Molecular Dynamics Exploration

Palko Ulbrich, Manuela Waldner, Katka Furmanová, Sérgio Manuel Marques, David Bednář, Bára Kozlíková, Jan Byška

IEEE Transactions on Visualization and Computer Graphics

10.1109/tvcg.2022.3209411

A multimodal smartwatch-based interaction concept for immersive environments

Matěj Lang, Clemens Strobel, Felix Weckesser, Danielle Langlois, Enkelejda Kasneci, Bára Kozlíková, Michael Krone

Computers & Graphics

10.1016/j.cag.2023.10.010

Immersive Reading in VR

Nika Kunzová

IASDR 2023: Life-Changing Design

10.21606/iasdr.2023.765

Bookwander: From Printed Fiction to Virtual Reality—Four Design Approaches for Enhanced VR Reading Experiences

Nika Kunzová, Daniel Echeverri

10.1007/978-3-031-47655-6_19

Effect of the Rings: A Visual Story Design Comparing Three Chemical Characters

Hana Pokojná, Farhan Rasheed, Konrad J. Shönborn

Biomedical Visualization

10.1007/978-3-031-41652-1_6

Co-authored publications (2023)

Nanotilus: Generator of Immersive Guided-Tours in Crowded 3D Environments

Ruwayda Alharbi, Ondrej Strnad, Laura R. Luidolt, Manuela Waldner, David Kouřil, Ciril Bohak, Tobias Klein, Eduard Groller, Ivan Viola

EbAcraft: Engaging Local Communities in Learning About Ecosystem-Based Adaptation for Coastal Cities in Europe

Ítalo de Sena, Chiara Cocco, Vojtěch Brůža, Pierre Lenicolais, Saul Crowley, Francesco Pilla

2022

Vivern–A Virtual Environment for Multiscale Visualization and Modeling of DNA Nanostructures

David Kuťák, Matias Nicolas Selzer, Jan Byška, Maria Lujan Ganuza, Ivan Barisic, Bára Kozlíková, Haichao Miao

IEEE Transactions on Visualization and Computer Graphics

10.1109/tvcg.2021.3106328

CATANA: an online modelling environment for proteins and nucleic acid nanostructures

David Kuťák

Nucleic Acids Research

10.1093/nar/gkac350

The transparent minds: methods of creation of 3D digital models from patient specific data

Hana Pokojná, Caroline Erolin, Christopher Henstridge

Journal of Visual Communication in Medicine

10.1080/17453054.2021.2008230

LoopGrafter: a web tool for transplanting dynamical loops for protein engineering

Palko Ulbrich, Filip Opálený, Jan Štourač, Jan Byška, Jiří Damborský, Bára Kozlíková

Nucleic Acids Research

10.1093/nar/gkac249

* (This Name Can Be Automatically Generated)

Matěj Lang, Filip Kiraa Opálený, Palko Ulbrich, Lev Nikolajevič

Submitted to Alt.Vis 2022

Co-authored publications (2022)

Multiscale Unfolding: Illustratively Visualizing the Whole Genome at a Glance

Sarkis Halladjian, David Kouřil, Haichao Miao, M. Eduard Groller, Ivan Viola, Tobias Isenberg

Collaborative and individual learning of geography in immersive virtual reality: An effectiveness study

Michal Sedlák, Stefano Triberti, Čeněk Šašinka, Zdeněk Stachoň, Jirka Chmelík, Milan Doležal

Geography Education in a Collaborative Virtual Environment: A Qualitative Study on Geography Teachers

Kateřina Jochecová, Michal Černý, Zdeněk Stachoň, Hana Švedová, Natálie Káčová, Jirka Chmelík, Vojtěch Brůža, Ondřej Kvarda, Pavel Ugwitz, Alžběta Šašinková, Nicola Catherine Fořtová, Čeněk Šašinka

Understanding the impact of statistical and machine learning choices on predictive models for radiotherapy

Ádám Böröndy, Katka Furmanová, Renata Georgia Raidou

2021

HyperLabels: Browsing of Dense and Hierarchical Molecular 3D Models

David Kouřil, Tobias Isenberg, Bára Kozlíková, Miriah Meyer, M. Eduard Groller, Ivan Viola

IEEE Transactions on Visualization and Computer Graphics

10.1109/tvcg.2020.2975583

Unified Nanotechnology Format: One Way to Store Them All

David Kuťák, Erik Poppleton, Haichao Miao, Petr Šulc, Ivan Barisic

Molecules

10.3390/molecules27010063

PREVIS: Predictive visual analytics of anatomical variability for radiotherapy decision support

Katka Furmanová, Ludvig P. Muren, Oscar Casares-Magaz, Vitali Moiseenko, John P. Einck, Sara Pilskog, Renata G. Raidou

Computers & Graphics

10.1016/j.cag.2021.04.010

ChemVA: Interactive Visual Analysis of Chemical Compound Similarity in Virtual Screening

Palko Ulbrich, Jan Byška, Bára Kozlíková

IEEE Transactions on Visualization and Computer Graphics

10.1109/tvcg.2020.3030438

LoopGrafter: Visual Support for the Grafting Workflow of Protein Loops

Palko Ulbrich

IEEE Transactions on Visualization and Computer Graphics

10.1109/tvcg.2021.3114755

VRdeo: Creating engaging educational material for asynchronous student-teacher exchange using virtual reality

Vojtěch Brůža, Jan Byška, Jan Mičan, Bára Kozlíková

Computers & Graphics

10.1016/j.cag.2021.06.009

Co-authored publications (2021)

A Comparison of Monoscopic and Stereoscopic 3D Visualizations: Effect on Spatial Planning in Digital Twins

Lukáš Herman, Vojtěch Juřík, Dajana Snopková, Jirka Chmelík, Pavel Ugwitz, Zdeněk Stachoň, Čeněk Šašinka, Tomáš Řezník

Exploring tilting methods for typing under water

Cejka, Jan, Jirka Chmelík, Liarokapis, Fotis

2020

PINGU Principles of Interactive Navigation for Geospatial Understanding

Zolko Orémuš, Hassan, K.A., Jirka Chmelík, Knazkova, M., Jan Byška, Raidou, R.G., Bára Kozlíková

IEEE Pacific Visualization Symposium

10.1109/pacificvis48177.2020.7567

Taggle: Combining overview and details in tabular data visualizations

Katka Furmanová, Samuel Gratzl, Holger Stitz, Thomas Zichner, Miroslava Jarešová, Alexander Lex, Marc Streit

Information Visualization

10.1177/1473871619878085

DockVis: Visual Analysis of Molecular Docking Trajectories

Katka Furmanová, Ondřej Vávra, Bára Kozlíková, Jiří Damborský, Vojtěch Vonásek, David Bednář, Jan Byška

Computer Graphics Forum

10.1111/cgf.14048

Multiscale Visual Drilldown for the Analysis of Large Ensembles of Multi-Body Protein Complexes

Katka Furmanová, Adam Jurčík, Bára Kozlíková, Helwig Hauser, Jan Byška

IEEE Transactions on Visualization and Computer Graphics

10.1109/TVCG.2019.2934333

Using multiple planning scans to predict organ shape variability during RT for prostate cancer

Katka Furmanová, Renata G. Raidou, Nicolas Grossmann, Oscar Casares-Magaz, Vitali Moiseenko, John P. Einck, Ludvig P. Muren

ESTRO 2020

VAPOR: Visual Analytics for the Exploration of Pelvic Organ Variability in Radiotherapy.

Katka Furmanová, Nicolas Grossmann, Ludvig P. Muren, Oscar Casares-Magaz, Vitali Moiseenko, John P. Einck, Eduard M. Gröller, Renata G. Raidou

Computers & Graphics

Visual Analysis of Protein–Protein Interaction Docking Models Using COZOID Tool

Jan Byška, Adam Jurčík, Katka Furmanová, Bára Kozlíková, Jan Paleček

Protein-Protein Interaction Networks

Co-authored publications (2020)

The 3D hype: Evaluating the potential of real 3D visualization in geo-related applications

Vojtěch Juřík, Vincent Lecours, Lukáš Herman, Dajana Snopková, Adrianne John Galang, Zdeněk Stachoň, Jirka Chmelík, Petr Kubíček, Čeněk Šašinka

An Immersive Virtual Environment for Collaborative Geovisualization

Dolezal, Milan, Jirka Chmelík, Liarokapis, Fotis

Lessons learnt from developing visual analytics applications for adaptive prostate cancer radiotherapy

Renata Georgia Raidou, Katka Furmanová, Nicolas Grossmann, Oscar Casares-Magaz, Vitali Moiseenko, John P. Einck, Eduard Groller, Ludvig P. Muren

Intrinsic-Extrinsic Convolution and Pooling for Learning on 3D Protein Structures

Pedro Hermosilla, Marco Schäfer, Matěj Lang, Gloria Fackelmann, Pere Pau Vázquez, Bára Kozlíková, Michael Krone, Tobias Ritschel, Timo Ropinski

Dynamics-function relationship in the catalytic domains of N-terminal acetyltransferases

Angèle Abboud, Pierre Bédoucha, Jan Byška, Thomas Arnesen, Nathalie Reuter

Visual exploration of large normal mode spaces to study protein flexibility

Pierre Bédoucha, Nathalie Reuter, Helwig Hauser, Jan Byška

The Moving Target of Visualization Software for an Ever More Complex World

Guido Reina, Hank Childs, Krešimir Matković, Katja Bühler, Manuela Waldner, David Pugmire, Bára Kozlíková, Timo Ropinski, Patric Ljung, Takayuki Itoh, Eduard Groller, Michael Krone

2019

Labels on Levels: Labeling of Multi-Scale Multi-Instance and Crowded 3D Biological Environments

David Kouřil, Čmolík, L., Bára Kozlíková, Wu, H.-Y., Johnson, G., Goodsell, D.S., Olson, A., Gröller, M.E., Viola, I.

IEEE Transactions on Visualization and Computer Graphics

10.1109/tvcg.2018.2864491

An Interactive and Multimodal Virtual Mind Map for Future Workplace

David Kuťák, Milan Doležal, Bojan Kerous, Zdenek Eichler, Jiří Vašek, Fotis Liarokapis

Frontiers in ICT

10.3389/fict.2019.00014

DockVis: Visual Analysis of Molecular Docking Data

Katka Furmanová, Bára Kozlíková, Vojtěch Vonásek, Jan Byška

Eurographics Workshop on Visual Computing for Biology and Medicine

10.2312/vcbm.20191238

Visual Analysis of Ligand Trajectories in Molecular Dynamics

Adam Jurčík, Katka Furmanová, Jan Byška, Vojtěch Vonásek, Ondřej Vávra, Palko Ulbrich, Helwig Hauser, Bára Kozlíková

IEEE Pacific Visualization Symposium 2019

10.1109/pacificvis.2019.00032

Analysis of Long Molecular Dynamics Simulations Using Interactive Focus+Context Visualization

Jan Byška, Thomas Trautner, Sérgio Manuel Marques, Jiří Damborský, Bára Kozlíková, Manuela Waldner

Computer Graphics Forum

10.1111/cgf.13701

Co-authored publications (2019)

Multiscale Molecular Visualization

Miao, H., Klein, T., David Kouřil, Mindek, P., Schatz, K., Gröller, M.E., Bára Kozlíková, Isenberg, T., Viola, I.

Sampling-Based Motion Planning for Tracking Evolution of Dynamic Tunnels in Molecular Dynamics Simulations

Vonásek, V., Adam Jurčík, Katka Furmanová, Bára Kozlíková

Visualization of Large Molecular Trajectories

Duran, D., Hermosilla, P., Ropinski, T., Bára Kozlíková, Vinacua, À., Vázquez, P.-P.

Digital restoration of fragmentary human skeletal remains: Testing the feasibility of virtual reality

Jurda, M., Urbanová, P., Jirka Chmelík

Digitization and Visualization of Movements of Slovak Folk Dances

Hajdin, M., Kico, I., Dolezal, M., Jirka Chmelík, Doulamis, A., Liarokapis, F.

Identification of altitude profiles in 3D geovisualizations: the role of interaction and spatial abilities

Kubíček, P., Šašinka, Č., Stachoň, Z., Herman, L., Juřík, V., Urbánek, T., Jirka Chmelík

2018

CAVER Analyst 2.0: Analysis and visualization of channels and tunnels in protein structures and molecular dynamics trajectories

Adam Jurčík, Bednar, D., Jan Byška, Marques, S.M., Katka Furmanová, Daniel, L., Kokkonen, P., Brezovsky, J., Strnad, O., Stourac, J., Pavelka, A., Manak, M., Damborsky, J., Bára Kozlíková, Jan Štourač, Jiří Damborský

Bioinformatics

10.1093/bioinformatics/bty386

COZOID: Contact zone identifier for visual analysis of protein-protein interactions

Katka Furmanová, Jan Byška, Gröller, E.M., Viola, I., Paleček, J.J., Bára Kozlíková, Jan Paleček

BMC Bioinformatics

10.1186/s12859-018-2113-6

Co-authored publications (2018)

Computational analysis of protein tunnels and channels

Brezovsky, J., Bára Kozlíková, Damborsky, J.

Instant Construction and Visualization of Crowded Biological Environments

Klein, T., Autin, L., Bára Kozlíková, Goodsell, D.S., Olson, A., Gröller, M.E., Viola, I.

Collaborative Immersive Virtual Environments for Education in Geography

Čeněk Šašinka, Zdeněk Stachoň, Michal Sedlák, Jirka Chmelík, Lukáš Herman, Petr Kubíček, Alžběta Šašinková, Milan Doležal, Hynek Tejkl, Tomáš Urbánek, Hana Svatoňová, Pavel Ugwitz, Vojtěch Juřík

BEHAVIOR ANALYSIS IN VIRTUAL GEOVISUALIZATIONS: TOWARDS ECOLOGICAL VALIDITY

Jurik, Vojtech, Herman, Lukas, Sasinka, Cenek, Stachon, Zdenek, Jirka Chmelík, Strnadova, Alzbeta, Kubicek, Petr

2017

AnthroVis: Visual analysis of 3D mesh ensembles for forensic anthropology

Katka Furmanová, Urbanová, P., Bára Kozlíková, Petra Urbanová

Proceedings - SCCG 2017: 33rd Spring Conference on Computer Graphics

10.1145/3154353.3154363

Interactive exploration of ligand transportation through protein tunnels

Katka Furmanová, Miroslava Jarešová, Jan Byška, Adam Jurčík, Parulek, J., Hauser, H., Bára Kozlíková

BMC Bioinformatics

10.1186/s12859-016-1448-0

Visualization of Biomolecular Structures: State of the Art Revisited

Bára Kozlíková, Krone, M., Falk, M., Lindow, N., Baaden, M., Baum, D., Viola, I., Parulek, J., Hege, H.-C.

Computer Graphics Forum

10.1111/cgf.13072

VEAAR – Virtual environment for archaeological artefacts restoration

Jirka Chmelík, Jurda, M.

Proceedings of the ACM Symposium on Virtual Reality Software and Technology, VRST

10.1145/3139131.3141780

Co-authored publications (2017)

Comparative visualization of protein secondary structures

Kocincová, L., Miroslava Jarešová, Jan Byška, Parulek, J., Hauser, H., Bára Kozlíková

Generating various composite human faces from real 3D facial images

Chalás, I., Urbanová, P., Juřík, V., Ferková, Z., Jandová, M., Sochor, J., Bára Kozlíková

Tunnel detection in protein structures using sampling-based motion planning

Vonásek, V., Bára Kozlíková

3D MODELLING AND MAPPING FOR VIRTUAL EXPLORATION OF UNDERWATER ARCHAEOLOGY ASSETS

Liarokapis, F., Kouril, P., Agrafiotis, P., Demesticha, S., Jirka Chmelík, Skarlatos, D.

TESTING FEASIBILITY OF VIRTUAL REALITY HEADSET FOR PC-ASSISTED RESTORATION OF SKELETAL REMAINS

Jurda, Mikolas, Urbanova, Petra, Jirka Chmelík

When the display matters: A multifaceted perspective on 3D geovisualizations

Juřík, V., Herman, L., Šašinka, Č., Stachoň, Z., Jirka Chmelík

Watergate: Visual Exploration of Water Trajectories in Protein Dynamics

Viktor Vad, Jan Byška, Adam Jurčík, Ivan Viola, Eduard M. Gröller, Helwig Hauser, Sérgio Manuel Marques, Jiří Damborský, Bára Kozlíková

Protein Tunnel Reprojection for Physico-Chemical Property Analysis

Jan Malzahn, Bára Kozlíková, Timo Ropinski

2016

Accelerated visualization of transparent molecular surfaces in molecular dynamics

Adam Jurčík, Parulek, J., Sochor, J., Bára Kozlíková

IEEE Pacific Visualization Symposium

10.1109/pacificvis.2016.7465258

AnimoAminoMiner: Exploration of Protein Tunnels and their Properties in Molecular Dynamics

Jan Byška, Le Muzic, M., Gröller, M.E., Viola, I., Bára Kozlíková

IEEE Transactions on Visualization and Computer Graphics

10.1109/tvcg.2015.2467434

Body Motion Visualisation

Jirka Chmelík, Ronovska, Anna, Novosad, Stefan

Useful Symbiosis: Science, Technology, Art & Art Education

Co-authored publications (2016)

Application of sampling-based path planning for tunnel detection in dynamic protein structures

Vonásek, V., Bára Kozlíková

CAVER: Algorithms for Analyzing Dynamics of Tunnels in Macromolecules

Pavelka, A., Sebestova, E., Bára Kozlíková, Brezovsky, J., Sochor, J., Damborsky, J., Jiří Damborský

Visual Analysis of Biomolecular Cavities: State of the Art

Krone, M., Bára Kozlíková, Lindow, N., Baaden, M., Baum, D., Parulek, J., Hege, H.-C., Viola, I.

Unfolding and Interactive Exploration of Protein Tunnels and their Dynamics

Ivan Kolesár, Jan Byška, Julius Parulek, Helwig Hauser, Bára Kozlíková

2015

MoleCollar and Tunnel Heat Map Visualizations for Conveying Spatio-Temporo-Chemical Properties Across and Along Protein Voids

Jan Byška, Adam Jurčík, Gröller, M.E., Viola, I., Bára Kozlíková

Computer Graphics Forum

10.1111/cgf.12612

Path-planning algorithm for transportation of molecules through protein tunnel bottlenecks

Jan Byška, Kolingerová, I., Bára Kozlíková, Sochor, J.

Proceedings - SCCG 2015: 31st Spring Conference on Computer Graphics

10.1145/2788539.2788550

Visibility-based approach to surface detection of tunnels in proteins

Adam Jurčík, Jan Byška, Sochor, J., Bára Kozlíková

Proceedings - SCCG 2015: 31st Spring Conference on Computer Graphics

10.1145/2788539.2788548

Visualization of Biomolecular Structures: State of the Art

Bára Kozlíková, Michael Krone, Norbert Lindow, Martin Falk, Marc Baaden, Daniel Baum, Ivan Viola, Julius Parulek, Hans-Christian Hege

Eurographics Conference on Visualization (EuroVis) – STARs

10.2312/eurovisstar.20151112

Co-authored publications (2015)

Generation of Variable Human Faces from 3D Scan Dataset

Chalás, I., Ferková, Z., Katka Furmanová, Sochor, J., Bára Kozlíková

Human-computer interaction in real-3D and pseudo-3D cartographic visualization: A comparative study

Špriňarová, K., Juřík, V., Šašinka, Č., Herman, L., Štěrba, Z., Stachoň, Z., Jirka Chmelík, Bára Kozlíková

Automated facial landmark detection, comparison and visualization

Marek Galvánek, Katka Furmanová, Igor Chalás, Jiří Sochor

2014

CAVER Analyst 1.0: Graphic tool for interactive visualization and analysis of tunnels and channels in protein structures

Bára Kozlíková, Sebestova, E., Sustr, V., Brezovsky, J., Strnad, O., Daniel, L., Bednar, D., Pavelka, A., Manak, M., Bezdeka, M., Benes, P., Kotry, M., Gora, A., Damborsky, J., Sochor, J., Jiří Damborský

Bioinformatics

10.1093/bioinformatics/btu364

Co-authored publications (2014)

Detection of Intramolecular Tunnels Connecting sequence of Sites in Protein Structures

Strnad, O., Bára Kozlíková, Sochor, J.

2013

Co-authored publications (2013)

Real-time visualization and exploration of protein empty space with varying parameters

Strnad, O., Bára Kozlíková, Sustr, V., Sochor, J.

2012

Co-authored publications (2012)

CAVER 3.0: A Tool for the Analysis of Transport Pathways in Dynamic Protein Structures

Chovancova, E., Pavelka, A., Benes, P., Strnad, O., Brezovsky, J., Bára Kozlíková, Gora, A., Sustr, V., Klvana, M., Medek, P., Biedermannova, L., Sochor, J., Damborsky, J.

2011

Computation and visualization of surface of proteins and their channels

Bára Kozlíková, Aleksandrowicz, I., Sochor, J.

Proc. of the IADIS Int. Conf. Computer Graphics, Visualization, Computer Vision and Image Processing 2011, Part of the IADIS Multi Conf. on Computer Science and Information Systems 2011, MCCSIS 2011

2010

Caver Viewer - New tool enhancing computation and visualization of channels in proteins

Bára Kozlíková, Sochor, J., Szabó, T., Zamborský, M.

Proc. of the IADIS Int. Conf. - Computer Graphics, Visualization, Computer Vision and Image Processing, CGVCVIP 2010, Visual Commun., VC 2010, Web3DW 2010, Part of the MCCSIS 2010

2007

Visualization of tunnels in protein molecules

Bára Kozlíková, Andres, F., Sochor, J.

ACM International Conference on Computer Graphics, Virtual Reality and Visualisation in Africa

10.1145/1294685.1294704