Publications

2026

TerraTinker: Crafting Playful Geospatial Visualizations

Jonáš Rosecký, Adam Štěpánek, Adam Rychlý, Bára Kozlíková

Computer Graphics Forum

10.1111/cgf.70466

T(r)opical Islands: Visualizing & Understanding Socio-Technical Artifacts: Replication Package

Adam Štěpánek, Marco Raglianti, Vít Rusňák, Jan Byška, Bára Kozlíková, Michele Lanza

10.6084/m9.figshare.30444704

Understanding chemical reactions through multimedia resolution data artistic educational tool (MRDAET)

Hana Pokojná, Bára Kozlíková, Katka Furmanová, Adam Štěpánek, Simone Kriglstein

Protein Science

10.1002/pro.70648

Co-authored publications (2026)

Escaping the Valley of Boredom: Efficient User Resizing in Virtual Reality

Filip Nováček, Jirka Chmelík, Vít Rusňák

When Threats Go Unnoticed: The Design Pitfalls of Subtle Stressors in VR Exposure Therapy

Kateřina Švadlenková, Jirka Chmelík, Daniel Echeverri, Vojtěch Juřík, Václav Bílý, Vít Rusňák

2025

Tasks and Visual Abstractions for 3D Chromatin Representation

Adam Rychlý, Jan Byška, Bára Kozlíková, Katka Furmanová

Computer Graphics Forum

10.1111/cgf.70142

Helveg: Diagrams for Software Documentation

Adam Štěpánek, David Kuťák, Bára Kozlíková, Jan Byška

IEEE TRANSACTIONS ON VISUALIZATION AND COMPUTER GRAPHICS

10.1109/tvcg.2025.3589748 Preprint Supplementary material

Who Let the Guards Out: Visual Support for Patrolling Games

Matěj Lang, Adam Štěpánek, Róbert Zvara, Vojtěch Řehák, Bára Kozlíková

IEEE Transactions on Visualization and Computer Graphics

10.1109/tvcg.2024.3456306

Embarrassingly Agile-Data Visualization Methodology in Emergency Responses

Bára Kozlíková, Daniel Archambault, Johannes Dreesman, Andreas Kerren, Biagio Lucini, Cagatay Turkay

IEEE COMPUTER GRAPHICS AND APPLICATIONS

Immersive and Interactive Learning With eDIVE: A Solution for Creating Collaborative VR Education Experiences

Vojtěch Brůža, Alžběta Šašinková, Čeněk Šašinka, Zdeněk STACHOŇ, Bára Kozlíková, Jirka Chmelík

COMPUTER GRAPHICS FORUM

10.1111/cgf.70001

The Language of Infographics: Toward Understanding Conceptual Metaphor Use in Scientific Storytelling

Hana Pokojná, Tobias Isenberg, Stefan Bruckner, Bára Kozlíková, Laura Garrison

IEEE Transactions on Visualization and Computer Graphics

10.1109/tvcg.2024.3456327

Visual Support for the Loop Grafting Workflow on Proteins

Filip Opálený, Palko Ulbrich, Joan Planas Iglesias, Jan Byška, Jan Štourač, David Bednář, Katka Furmanová, Bára Kozlíková

IEEE Transactions on Visualization and Computer Graphics

10.1109/tvcg.2024.3456401

Co-authored publications (2025)

A Playful Participatory Planning System (P-PPS): A Framework for Collecting and Analyzing Player-Generated Spatial Data from Minecraft Worlds

Ítalo Sousa de Sena, Lasith Niroshan, Jonáš Rosecký, Vojtěch Brůža, Micheál Butler, Chiara Cocco

NegoDesign: A Game for Spatial Consensus Building for Heritage Reactivation

Chiara Cocco, Ítalo Sousa de Sena, Vojtěch Brůža, Micael Sousa, Grace Houser

2024

Stories with Style: Narrative, Virtual, and Imaginary Spaces of Reading Fiction in Virtual Reality

Nika Kunzová, Adam Štěpánek, Daniel Ricardo Echeverri Giraldo, Danielle Kathryn Langlois, Simone Kriglstein

MUM '24: Proceedings of the International Conference on Mobile and Ubiquitous Multimedia

10.1145/3701571.3701601

Interactive Diagrams for Software Documentation

Adam Štěpánek, David Kuťák, Bára Kozlíková, Jan Byška

IEEE Working Conference on Software Visualization (VISSOFT)

10.1109/VISSOFT64034.2024.00012 Preprint Supplementary material

ProjectAnatomy: A Handy Tool for Learning Forearm Anatomy with Augmented Physicalisations

Hana Pokojná, Bára Kozlíková, Katka Furmanová, Simone Kriglstein

Behaviour & Information Technology Special Issue "Data Physicalisations in the Wild"

10.1080/0144929x.2024.2413161

Antarstick: Extracting Snow Height From Time-Lapse Photography

Matěj Lang, Radoslav Mráz, Marek Trtík, Sergej Stoppel, Jan Byška, Bára Kozlíková

COMPUTER GRAPHICS FORUM

Design and evaluation of alphabetic and numeric input methods for virtual reality

David Kuťák, Danielle Kathryn Langlois, Roman Rozič, Jan Byška, Haichao Miao, Simone Kriglstein, Bára Kozlíková

Computers & Graphics

10.1016/j.cag.2024.103955

Cartography of Touch: Transformation of Touch through Anatomical Projections

Hana Pokojná

Leonardo

10.1162/leon_a_02403

Antarstick: Extracting Snow Height From Time‐Lapse Photography

Matěj Lang, Radoslav Mráz, Marek Trtík, Sergej Stoppel, Jan Byška, Bára Kozlíková

Computer Graphics Forum

10.1111/cgf.15088

Make Some Energy: Tangible and Interactive Chemical Reactions

Hana Pokojná, Bára Kozlíková, Simone Kriglstein, Daniel Echeverri

Proceedings of the Expanded 2024 Conference on Animation and Interactive Art

10.5281/zenodo.13382838

Co-authored publications (2024)

InVADo: Interactive Visual Analysis of Molecular Docking Data

Marco Schäfer, Nicolas Brich, Jan Byška, Sérgio Manuel Marques, David Bednář, Philipp Thiel, Bára Kozlíková, Michael Krone

Virtual reality inspection of chromatin 3D and 2D data

Elena Molina, David Kouřil, Tobias Isenberg, Bára Kozlíková, Pere-Pau Vázquez

Who benefits and who doesn't in virtual reality learning: An experimental study comparing two types of school

Radovan Šikl, Karla Brücknerová, Hana Švedová, Filip Děchtěrenko, Pavel Ugwitz, Jirka Chmelík, Hana Pokorná, Vojtěch Juřík

VRET ENVIRONMENTS ARCHITECTURE: ADJUSTING IMMERSIVE VIRTUAL ENVIRONMENTS FOR PSYCHOTHERAPEUTIC TRAINING

Vojtěch Juřík, Kristína Varšová, Jirka Chmelík, Oto Janoušek

2023

Seeing the unseen: Comparison study of representation approaches for biochemical processes in education

Hana Pokojná, Bára Kozlíková, Drew Berry, Simone Kriglstein, Katka Furmanová

PLoS ONE

10.1371/journal.pone.0293592

State of the Art of Molecular Visualization in Immersive Virtual Environments

David Kuťák, Pere-Pau Vázquez, Tobias Isenberg, Michael Krone, Marc Baaden, Jan Byška, Bára Kozlíková, Haichao Miao

Computer Graphics Forum

10.1111/cgf.14738

A multimodal smartwatch-based interaction concept for immersive environments

Matěj Lang, Clemens Strobel, Felix Weckesser, Danielle Kathryn Langlois, Enkelejda Kasneci, Bára Kozlíková, Michael Krone

Computers & Graphics

10.1016/j.cag.2023.10.010

sMolBoxes: Dataflow Model for Molecular Dynamics Exploration

Palko Ulbrich, Manuela Waldner, Katka Furmanová, Sérgio Manuel Marques, David Bednář, Bára Kozlíková, Jan Byška

IEEE Transactions on Visualization and Computer Graphics

10.1109/tvcg.2022.3209411

Molecumentary: Adaptable Narrated Documentaries Using Molecular Visualization

David Kouřil, Ondřej Strnad, Peter Mindek, Sarkis Halladjian, Tobias Isenberg, M. Eduard Gröller, Ivan Viola

IEEE Transactions on Visualization and Computer Graphics

10.1109/tvcg.2021.3130670

Immersive Reading in VR

Nika Kunzová

IASDR 2023: Life-Changing Design

10.21606/iasdr.2023.765

Bookwander: From Printed Fiction to Virtual Reality—Four Design Approaches for Enhanced VR Reading Experiences

Nika Kunzová, Daniel Echeverri

10.1007/978-3-031-47655-6_19

Effect of the Rings: A Visual Story Design Comparing Three Chemical Characters

Hana Pokojná, Farhan Rasheed, Konrad J. Shönborn

Biomedical Visualization

10.1007/978-3-031-41652-1_6

Co-authored publications (2023)

xOpat: eXplainable Open Pathology Analysis Tool

Jiří Horák, Katka Furmanová, Bára Kozlíková, Tomáš Brázdil, Petr Holub, Martin Kačenga, Matej Gallo, Rudolf Nenutil, Jan Byška, Vít Rusňák, Jirka Horák

Nanotilus: Generator of Immersive Guided-Tours in Crowded 3D Environments

Ruwayda Alharbi, Ondřej Strnad, Laura R. Luidolt, Manuela Waldner, David Kouřil, Ciril Bohak, Tobias Klein, Eduard Gröller, Ivan Viola

EbAcraft: Engaging Local Communities in Learning About Ecosystem-Based Adaptation for Coastal Cities in Europe

Ítalo de Sena, Chiara Cocco, Vojtěch Brůža, Pierre Lenicolais, Saul Crowley, Francesco Pilla

2022

Vivern – A Virtual Environment for Multiscale Visualization and Modeling of DNA Nanostructures

David Kuťák, Matias Nicolás Selzer, Jan Byška, María Luján Ganuza, Ivan Barišić, Bára Kozlíková, Haichao Miao

IEEE Transactions on Visualization and Computer Graphics

Vivern–A Virtual Environment for Multiscale Visualization and Modeling of DNA Nanostructures

David Kuťák, Matias Nicolás Selzer, Jan Byška, María Luján Ganuza, Ivan Barišić, Bára Kozlíková, Haichao Miao

IEEE Transactions on Visualization and Computer Graphics

10.1109/tvcg.2021.3106328

CATANA: an online modelling environment for proteins and nucleic acid nanostructures

David Kuťák

Nucleic Acids Research

10.1093/nar/gkac350

The transparent minds: methods of creation of 3D digital models from patient specific data

Hana Pokojná, Caroline Erolin, Christopher Henstridge

Journal of Visual Communication in Medicine

10.1080/17453054.2021.2008230

* (This Name Can Be Automatically Generated)

Matěj Lang, Filip Kiraa Opálený, Palko Ulbrich, Lev Nikolajevič

Submitted to Alt.Vis 2022

Co-authored publications (2022)

LoopGrafter: a web tool for transplanting dynamical loops for protein engineering

Joan Planas Iglesias, Filip Opálený, Palko Ulbrich, Jan Štourač, Zainab Kemi Sanusi, José Gaspar Rangel Pamplona Pizarro Pinto, Andrea Smith, Jan Byška, Jiří Damborský, Bára Kozlíková, David Bednář

Multiscale Unfolding: Illustratively Visualizing the Whole Genome at a Glance

Sarkis Halladjian, David Kouřil, Haichao Miao, M. Eduard Gröller, Ivan Viola, Tobias Isenberg

Collaborative and individual learning of geography in immersive virtual reality: An effectiveness study

Michal Sedlák, Stefano Triberti, Čeněk Šašinka, Zdeněk STACHOŇ, Jirka Chmelík, Milan Doležal

Geography Education in a Collaborative Virtual Environment: A Qualitative Study on Geography Teachers

Kateřina Jochecová, Michal Černý, Zdeněk STACHOŇ, Hana Švedová, Natálie Káčová, Jirka Chmelík, Vojtěch Brůža, Ondřej Kvarda, Pavel Ugwitz, Alžběta Šašinková, Nicola Catherine Fořtová, Čeněk Šašinka

Understanding the impact of statistical and machine learning choices on predictive models for radiotherapy

Ádám Böröndy, Katka Furmanová, Renata Georgia Raidou

2021

VRdeo: Creating engaging educational material for asynchronous student-teacher exchange using virtual reality

Vojtěch Brůža, Jan Byška, Jan Mičan, Bára Kozlíková

COMPUTERS & GRAPHICS-UK

10.1016/j.cag.2021.06.009

HyperLabels: Browsing of Dense and Hierarchical Molecular 3D Models

David Kouřil, Tobias Isenberg, Bára Kozlíková, Miriah Meyer, Eduard Groeller, Ivan Viola

IEEE Transactions on Visualization and Computer Graphics

10.1109/tvcg.2020.2975583

Visilant: Visual Support for the Exploration and Analytical Process Tracking in Criminal Investigations

Kiki Zákopčanová, Marko Řeháček, Jozef Bátrna, Daniel Plakinger, Sergej Stoppel, Bára Kozlíková

IEEE Transactions on Visualization and Computer Graphics

10.1109/TVCG.2020.3030356

Unified Nanotechnology Format: One Way to Store Them All

David Kuťák, Erik Poppleton, Haichao Miao, Petr Šulc, Ivan Barišić

Molecules

10.3390/molecules27010063

PREVIS: Predictive visual analytics of anatomical variability for radiotherapy decision support

Katka Furmanová, Ludvig P. Muren, Oscar Casares-Magaz, Vitali Moiseenko, John P. Einck, Sara Pilskog, Renata G. Raidou

Computers & Graphics

10.1016/j.cag.2021.04.010

LoopGrafter: Visual Support for the Grafting Workflow of Protein Loops

Palko Ulbrich

IEEE Transactions on Visualization and Computer Graphics

10.1109/tvcg.2021.3114755

Co-authored publications (2021)

ChemVA: Interactive Visual Analysis of Chemical Compound Similarity in Virtual Screening

María Virginia Sabando, Palko Ulbrich, Matías Selzer, Jan Byška, Jan Mičan, Ignacio Ponzoni, Axel J. Soto, María Luján Ganuza, Bára Kozlíková

Intrinsic-Extrinsic Convolution and Pooling for Learning on 3D Protein Structures

Pedro Hermosilla Casajús, Marco Schäfer, Matěj Lang, Gloria Fackelmann, Pere-Pau Vázquez Alcocer, Bára Kozlíková, Michael Krone, Tobias Ritschel, Timo Ropinski

A Comparison of Monoscopic and Stereoscopic 3D Visualizations: Effect on Spatial Planning in Digital Twins

Lukáš Herman, Vojtěch Juřík, Dajana Snopková, Jirka Chmelík, Pavel Ugwitz, Zdeněk STACHOŇ, Čeněk Šašinka, Tomáš Řezník

Exploring tilting methods for typing under water

Cejka, Jan, Jirka Chmelík, Liarokapis, Fotis

2020

DockVis: Visual Analysis of Molecular Docking Trajectories

Katka Furmanová, Ondřej Vávra, Bára Kozlíková, Jiří Damborský, Vojtěch Vonásek, David Bednář, Jan Byška

Computer Graphics Forum

10.1111/cgf.14048

Multiscale Visual Drilldown for the Analysis of Large Ensembles of Multi-Body Protein Complexes

Katka Furmanová, Adam Jurčík, Bára Kozlíková, Helwig Hauser, Jan Byška

IEEE Transactions on Visualization and Computer Graphics

10.1109/TVCG.2019.2934333

PINGU: Principles of Interactive Navigation for Geospatial Understanding

Zolko Orémuš, Kahin Akram Hassan, Jirka Chmelík, Michaela Kňažková, Jan Byška, Renata Georgia Raidou, Bára Kozlíková

2020 IEEE Pacific Visualization Symposium (PacificVis)

10.1109/pacificvis48177.2020.7567

Visual Analysis of Protein–Protein Interaction Docking Models Using COZOID Tool

Jan Byška, Adam Jurčík, Katka Furmanová, Bára Kozlíková, Jan Paleček

Protein-Protein Interaction Networks

Taggle: Combining overview and details in tabular data visualizations

Katka Furmanová, Samuel Gratzl, Holger Stitz, Thomas Zichner, Miroslava Jarešová, Alexander Lex, Marc Streit

Information Visualization

10.1177/1473871619878085

Using multiple planning scans to predict organ shape variability during RT for prostate cancer

Katka Furmanová, Renata G. Raidou, Nicolas Grossmann, Oscar Casares-Magaz, Vitali Moiseenko, John P. Einck, Ludvig P. Muren

ESTRO 2020

VAPOR: Visual Analytics for the Exploration of Pelvic Organ Variability in Radiotherapy.

Katka Furmanová, Nicolas Grossmann, Ludvig P. Muren, Oscar Casares-Magaz, Vitali Moiseenko, John P. Einck, Eduard M. Gröller, Renata G. Raidou

Computers & Graphics

Co-authored publications (2020)

Searching Multiple Approximate Solutions in Configuration Space to Guide Sampling-Based Motion Planning

Vojtěch Vonásek, Robert Pěnička, Bára Kozlíková

Case Studies for Working with Domain Experts

Johanna Beyer, Charles Hansen, Mario Hlawitschka, Ingrid Hotz, Bára Kozlíková, Gerik Scheuermann, Markus Stommel, Marc Streit, Johannes Waschke, Thomas Wischgoll, Yong Wan

The moving target of visualization software for an increasingly complex world

Guido Reina, Hank Childs, Krešimir Matković, Katja Bühler, Manuela Waldner, David Pugmire, Bára Kozlíková, Timo Ropinski, Patric Ljung, Takayuki Itoh, Eduard Gröller, Michael Krone

The 3D hype: Evaluating the potential of real 3D visualization in geo-related applications

Vojtěch Juřík, Vincent Lecours, Lukáš Herman, Dajana Snopková, Adrianne John Galang, Zdeněk STACHOŇ, Jirka Chmelík, Petr Kubíček, Čeněk Šašinka

An Immersive Virtual Environment for Collaborative Geovisualization

Dolezal, Milan, Jirka Chmelík, Liarokapis, Fotis

Lessons learnt from developing visual analytics applications for adaptive prostate cancer radiotherapy

Renata Georgia Raidou, Katka Furmanová, Nicolas Grossmann, Oscar Casares-Magaz, Vitali Moiseenko, John P. Einck, Eduard Gröller, Ludvig P. Muren

Dynamics-function relationship in the catalytic domains of N-terminal acetyltransferases

Angèle Abboud, Pierre Bédoucha, Jan Byška, Thomas Arnesen, Nathalie Reuter

Visual exploration of large normal mode spaces to study protein flexibility

Pierre Bédoucha, Nathalie Reuter, Helwig Hauser, Jan Byška

The Moving Target of Visualization Software for an Ever More Complex World

Guido Reina, Hank Childs, Krešimir Matković, Katja Bühler, Manuela Waldner, David Pugmire, Bára Kozlíková, Timo Ropinski, Patric Ljung, Takayuki Itoh, Eduard Gröller, Michael Krone

2019

DockVis: Visual Analysis of Molecular Docking Data

Katka Furmanová, Bára Kozlíková, Vojtěch Vonásek, Jan Byška

Eurographics Workshop on Visual Computing for Biology and Medicine

10.2312/vcbm.20191238

Labels on Levels: Labeling of Multi-Scale Multi-Instance and Crowded 3D Biological Environments

David Kouřil, Ladislav Čmolík, Bára Kozlíková, Hsiang-Yun Wu, Graham Johnson, David S. Goodsell, Arthur Olson, Eduard M. Groeller, Ivan Viola

IEEE Transactions on Visualization and Computer Graphics

10.1109/TVCG.2018.2864491

Analysis of Long Molecular Dynamics Simulations Using Interactive Focus+Context Visualization

Jan Byška, Thomas Trautner, Sérgio Manuel Marques, Jiří Damborský, Bára Kozlíková, Manuela Waldner

Computer Graphics Forum

10.1111/cgf.13701

Visual Analysis of Ligand Trajectories in Molecular Dynamics

Adam Jurčík, Katka Furmanová, Jan Byška, Vojtěch Vonásek, Ondřej Vávra, Palko Ulbrich, Helwig Hauser, Bára Kozlíková

IEEE Pacific Visualization Symposium 2019

10.1109/pacificvis.2019.00032

An Interactive and Multimodal Virtual Mind Map for Future Workplace

David Kuťák, Milan Doležal, Bojan Kerous, Zdenek Eichler, Jiří Vašek, Fotis Liarokapis

Frontiers in ICT

10.3389/fict.2019.00014

Co-authored publications (2019)

Computing multiple guiding paths for sampling-based motion planning

Vojtěch Vonásek, Robert Pěnička, Bára Kozlíková

Visualization of Large Molecular Trajectories

David Duran, Pedro Hermosilla, Timo Ropinski, Bára Kozlíková, Álvar Vinacua, Pere-Pau Vázquez

Multiscale Molecular Visualization

Haichao Miao, Tobias Klein, David Kouřil, Peter Mindek, Karsten Schatz, Eduard M. Gröller, Bára Kozlíková, Tobias Isenberg, Ivan Viola

Sampling-based Motion Planning for Tracking Evolution of Dynamic Tunnels in Molecular Dynamics Simulations

Vojtěch Vonásek, Adam Jurčík, Katka Furmanová, Bára Kozlíková

Digital restoration of fragmentary human skeletal remains: Testing the feasibility of virtual reality

Jurda, M., Urbanová, P., Jirka Chmelík

Digitization and Visualization of Movements of Slovak Folk Dances

Hajdin, M., Kico, I., Dolezal, M., Jirka Chmelík, Doulamis, A., Liarokapis, F.

Identification of altitude profiles in 3D geovisualizations: the role of interaction and spatial abilities

Kubíček, P., Šašinka, Č., Stachoň, Z., Herman, L., Juřík, V., Urbánek, T., Jirka Chmelík

2018

CAVER Analyst 2.0: Analysis and Visualization of Channels and Tunnels in Protein Structures and Molecular Dynamics Trajectories

Adam Jurčík, David Bednář, Jan Byška, Sérgio Manuel Marques, Katka Furmanová, Lukáš Daniel, Piia Pauliina Kokkonen, Jan Brezovský, Ondřej Strnad, Jan Štourač, Antonín Pavelka, Martin Manak, Jiří Damborský, Bára Kozlíková

Bioinformatics

10.1093/bioinformatics/bty386

COZOID: COntact ZOne IDentifier for visual analysis of protein-protein interactions

Katka Furmanová, Jan Byška, Eduard M. Gröller, Ivan Viola, Jan Paleček, Bára Kozlíková

BMC Bioinformatics

10.1186/s12859-018-2113-6

Co-authored publications (2018)

Computational Analysis of Protein Tunnels and Channels

Jan Brezovský, Bára Kozlíková, Jiří Damborský

Instant Construction and Visualization of Crowded Biological Environments

Tobias Klein, Ludovic Autin, Bára Kozlíková, David S. Goodsell, Arthur Olson, Eduard M. Gröller, Ivan Viola

Collaborative Immersive Virtual Environments for Education in Geography

Čeněk Šašinka, Zdeněk STACHOŇ, Michal Sedlák, Jirka Chmelík, Lukáš Herman, Petr Kubíček, Alžběta Šašinková, Milan Doležal, Hynek Tejkl, Tomáš Urbánek, Hana Svatoňová, Pavel Ugwitz, Vojtěch Juřík

BEHAVIOR ANALYSIS IN VIRTUAL GEOVISUALIZATIONS: TOWARDS ECOLOGICAL VALIDITY

Jurik, Vojtech, Herman, Lukas, Sasinka, Cenek, Stachon, Zdenek, Jirka Chmelík, Strnadova, Alzbeta, Kubicek, Petr

2017

AnthroVis: Visual Analysis of 3D Mesh Ensembles for Forensic Anthropology

Katka Furmanová, Petra Urbanová, Bára Kozlíková

Proceedings of the 33rd Spring Conference on Computer Graphics

10.1145/3154353.3154363

Interactive Exploration of Ligand Transportation through Protein Tunnels

Katka Furmanová, Miroslava Jarešová, Jan Byška, Adam Jurčík, Julius Parulek, Helwig Hauser, Bára Kozlíková

BMC Bioinformatics

10.1186/s12859-016-1448-0

Visualization of Biomolecular Structures: State of the Art Revisited

Bára Kozlíková, Michael Krone, Martin Falk, Norbert Lindow, Marc Baaden, Daniel Baum, Ivan Viola, Julius Parulek, Hans-Christian Hege

Computer Graphics Forum

10.1111/cgf.13072

VEAAR – Virtual environment for archaeological artefacts restoration

Jirka Chmelík, Jurda, M.

Proceedings of the ACM Symposium on Virtual Reality Software and Technology, VRST

10.1145/3139131.3141780

Co-authored publications (2017)

Protein Tunnel Reprojection for Physico-Chemical Property Analysis

Jan Malzahn, Bára Kozlíková, Timo Ropinski

Watergate: Visual Exploration of Water Trajectories in Protein Dynamics

Viktor Vad, Jan Byška, Adam Jurčík, Ivan Viola, Eduard M. Gröller, Helwig Hauser, Sérgio Manuel Marques, Jiří Damborský, Bára Kozlíková

Tunnel detection in protein structures using sampling-based motion planning

Vojtěch Vonásek, Bára Kozlíková

Comparative Visualization of Protein Secondary Structures

Lucia Kocincová, Miroslava Jarešová, Jan Byška, Julius Parulek, Helwig Hauser, Bára Kozlíková

Generating various composite human faces from real 3D facial images

Igor Chalás, Petra Urbanová, Vojtěch Juřík, Zuzana Ferková, Marie Jandová, Jiří Sochor, Bára Kozlíková

3D MODELLING AND MAPPING FOR VIRTUAL EXPLORATION OF UNDERWATER ARCHAEOLOGY ASSETS

Liarokapis, F., Kouril, P., Agrafiotis, P., Demesticha, S., Jirka Chmelík, Skarlatos, D.

TESTING FEASIBILITY OF VIRTUAL REALITY HEADSET FOR PC-ASSISTED RESTORATION OF SKELETAL REMAINS

Jurda, Mikolas, Urbanova, Petra, Jirka Chmelík

When the display matters: A multifaceted perspective on 3D geovisualizations

Juřík, V., Herman, L., Šašinka, Č., Stachoň, Z., Jirka Chmelík

2016

Accelerated Visualization of Transparent Molecular Surfaces in Molecular Dynamics

Adam Jurčík, Julius Parulek, Jiří Sochor, Bára Kozlíková

IEEE Pacific Visualization Symposium 2016

10.1109/PACIFICVIS.2016.7465258

AnimoAminoMiner: Exploration of Protein Tunnels and their Properties in Molecular Dynamics

Jan Byška, Mathieu Le Muzic, Eduard Gröller, Ivan Viola, Bára Kozlíková

IEEE Transactions on Visualization and Computer Graphics

10.1109/TVCG.2015.2467434

Body Motion Visualisation

Jirka Chmelík, Ronovska, Anna, Novosad, Stefan

Useful Symbiosis: Science, Technology, Art & Art Education

Co-authored publications (2016)

Unfolding and Interactive Exploration of Protein Tunnels and their Dynamics.

Ivan Kolesár, Jan Byška, Julius Parulek, Helwig Hauser, Bára Kozlíková

Application of Sampling-based Path Planning for Tunnel Detection in Dynamic Protein Structures

Vojtěch Vonásek, Bára Kozlíková

Visual Analysis of Biomolecular Cavities: State of the Art

Michael Krone, Bára Kozlíková, Norbert Lindow, Marc Baaden, Daniel Baum, Julius Parulek, Hans-Christian Hege, Ivan Viola

Vliv formy 3D zobrazení geografické informace na její kognitivní zpracování

Vojtěch Juřík, Čeněk Šašinka, Kateřina Špriňarová, Lukáš Herman, Zbyněk Štěrba, Zdeněk STACHOŇ, Jirka Chmelík, Bára Kozlíková

CAVER: Algorithms for Analyzing Dynamics of Tunnels in Macromolecules

Antonín Pavelka, Eva Šebestová, Bára Kozlíková, Jan Brezovský, Jiří Sochor, Jiří Damborský

2015

MoleCollar and Tunnel Heat Map Visualizations for Conveying Spatio-Temporo-Chemical Properties Across and Along Protein Voids

Jan Byška, Adam Jurčík, Eduard M. Gröller, Ivan Viola, Bára Kozlíková

Computer Graphics Forum

10.1111/cgf.12612

Visualization of Biomolecular Structures: State of the Art

Bára Kozlíková, Michael Krone, Norbert Lindow, Martin Falk, Marc Baaden, Daniel Baum, Ivan Viola, Julius Parulek, Hans-Christian Hege

Eurographics Conference on Visualization (EuroVis) - STARs

10.2312/eurovisstar.20151112

Path-planning algorithm for transportation of molecules through protein tunnel bottlenecks

Jan Byška, Ivana Kolingerová, Bára Kozlíková, Jiří Sochor

31st Proceedings of Spring Conference on Computer Graphics

10.1145/2788539.2788550

Visibility-Based Approach to Surface Detection of Tunnels in Proteins

Adam Jurčík, Jan Byška, Jiří Sochor, Bára Kozlíková

31st Proceedings of Spring Conference on Computer Graphics

10.1145/2788539.2788548

Co-authored publications (2015)

Generation of variable human faces from 3D scan dataset

Igor Chalás, Zuzana Ferková, Katka Furmanová, Jiří Sochor, Bára Kozlíková

How accurate is 3D facial morphology for personal identication?

Petra Urbanová, Igor Chalás, Bára Kozlíková

NEWRON – terapeutický software k volnému využití

Pavel Humpolíček, Bára Kozlíková, Jirka Chmelík

Human-computer Interaction in Real 3D and Pseudo-3D Cartographic Visualization: A Comparative Study

Kateřina Špriňarová, Vojtěch Juřík, Čeněk Šašinka, Lukáš Herman, Zbyněk Štěrba, Zdeněk STACHOŇ, Jirka Chmelík, Bára Kozlíková

NEWRON – Therapeutic Software for Free usage

Pavel Humpolíček, Bára Kozlíková, Jirka Chmelík

Human-computer interaction in real-3D and pseudo-3D cartographic visualization: A comparative study

Špriňarová, K., Juřík, V., Šašinka, Č., Herman, L., Štěrba, Z., Stachoň, Z., Jirka Chmelík, Bára Kozlíková

Automated facial landmark detection, comparison and visualization

Marek Galvánek, Katka Furmanová, Igor Chalás, Jiří Sochor

2014

CAVER Analyst 1.0: Graphic tool for interactive visualization and analysis of tunnels and channels in protein structures

Bára Kozlíková, Eva Šebestová, Vilém Šustr, Jan Brezovský, Ondřej Strnad, Lukáš Daniel, David Bednář, Antonín Pavelka, Martin Manak, Martin Bezděka, Petr Beneš, Matúš Kotry, Artur Wiktor Gora, Jiří Damborský, Jiří Sochor

Bioinformatics

10.1093/bioinformatics/btu364

Aktuální stav v oblasti analýzy a vizualizace proteinových struktur

Bára Kozlíková

přednáška na Katedře informatiky a výpočetní techniky ZČU Plzeň

Visualizing Movements of Protein Tunnels in Molecular Dynamics Simulations

Bára Kozlíková, Adam Jurčík, Jan Byška, Ondřej Strnad, Jiří Sochor

EG VCBM 2014 Eurographics Workshop on Visual Computing for Biology and Medicine

Co-authored publications (2014)

Forensic 3D facial identication software (FIDENTIS)

Igor Chalás, Petra Urbanová, Zuzana Kotulanová, Marie Jandová, Miroslav Králík, Bára Kozlíková, Jiří Sochor

Detection of Intramolecular Tunnels Connecting Sequence of Sites in Protein Structures

Ondřej Strnad, Bára Kozlíková, Jiří Sochor

Geometrical Detection of Pathways in Protein Structures Leading Among More Binding Sites

Ondřej Strnad, Vilém Šustr, Bára Kozlíková, Jiří Sochor

2013

Co-authored publications (2013)

Využití 3D záznamu lidského obličeje pro výuku somatoskopických znaků

Igor Chalás, Zuzana Kotulanová, Bára Kozlíková

Real-time Visualization and Exploration of Protein Empty Space with Varying Parameters

Ondřej Strnad, Bára Kozlíková, Vilém Šustr, Jiří Sochor

Real-time visualization of protein empty space with varying parameters

Ondřej Strnad, Vilém Šustr, Bára Kozlíková, Jiří Sochor

2012

Co-authored publications (2012)

CAVER 3.0: A Tool for the Analysis of Transport Pathways in Dynamic Protein Structures

Eva Chovancová, Antonín Pavelka, Petr Beneš, Ondřej Strnad, Jan Brezovský, Bára Kozlíková, Artur Wiktor Gora, Vilém Šustr, Martin Klvaňa, Petr Medek, Lada Biedermannová, Jiří Sochor, Jiří Damborský

2011

Computation and Visualization of Surface of Proteins and their Channels

Bára Kozlíková, Igor Aleksandrowicz, Jiří Sochor

The IADIS Computer Graphics, Visualization, Computer Vision and Image Processing (CGVCVIP) 2011

Co-authored publications (2011)

CAVER 3.0: A Tool For Efficient Analysis Of Tunnels In Dynamic Protein Structures

Eva Chovancová, Petr Beneš, Antonín Pavelka, Petr Medek, Jan Brezovský, Bára Kozlíková, Martin Klvaňa, Vilém Šustr, Lada Biedermannová, Ondřej Strnad, Artur Wiktor Gora, Jiří Sochor, Jiří Damborský

2010

CAVER Viewer-new tool enhancing computation and visualization of channels in proteins

Bára Kozlíková, Jiří Sochor, Tibor Szabó, Matúš Zamborský

The IADIS Computer Graphics, Visualization, Computer Vision and Image Processing (CGVCVIP) 2010

Caver Viewer - New tool enhancing computation and visualization of channels in proteins

Bára Kozlíková, Sochor, J., Szabó, T., Zamborský, M.

Proc. of the IADIS Int. Conf. - Computer Graphics, Visualization, Computer Vision and Image Processing, CGVCVIP 2010, Visual Commun., VC 2010, Web3DW 2010, Part of the MCCSIS 2010

2009

Co-authored publications (2009)

Dynamic visualization of protein secondary structures

Matúš Zamborský, Tibor Szabó, Bára Kozlíková

2007

Visualization of Tunnels in Protein Molecules

Bára Kozlíková, Filip Andres, Jiří Sochor

Computer graphics, virtual reality, visualisation and interaction in Africa AFRIGRAPH '07

10.1145/1294685.1294704